Variant report

Variant	rs10236326
Chromosome Location	chr7:121248173-121248174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10233824	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10261193	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386607	0.97[ASN][1000 genomes]
rs17143567	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28581422	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28592962	0.96[ASN][1000 genomes]
rs41508049	0.90[ASN][1000 genomes]
rs59055243	0.97[ASN][1000 genomes]
rs59585833	0.97[ASN][1000 genomes]
rs73429199	0.97[ASN][1000 genomes]
rs73429200	0.97[ASN][1000 genomes]
rs7795638	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121245400-121248800	Weak transcription	HSMM	muscle
2	chr7:121245600-121249000	Weak transcription	Stomach Mucosa	stomach
3	chr7:121245800-121250600	Weak transcription	Fetal Lung	lung
4	chr7:121246000-121248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:121246000-121248800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:121246000-121248800	Weak transcription	Pancreas	Pancrea
7	chr7:121246000-121249000	Weak transcription	NHEK	skin
8	chr7:121246000-121250000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:121246000-121250200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:121246000-121250400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:121246000-121250400	Weak transcription	Fetal Stomach	stomach
12	chr7:121246200-121250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:121246800-121248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121247000-121248400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:121247400-121250400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:121247800-121250200	Enhancers	Fetal Brain Male	brain
17	chr7:121248000-121250200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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