Variant report

Variant	rs10236369
Chromosome Location	chr7:12280838-12280839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1020004	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10235395	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11974384	0.94[EUR][1000 genomes]
rs11983898	0.90[ASN][1000 genomes]
rs12666249	0.94[EUR][1000 genomes]
rs12699335	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699336	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs14978	0.97[EUR][1000 genomes]
rs1548885	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17149894	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043538	0.87[EUR][1000 genomes]
rs2043540	0.88[ASN][1000 genomes]
rs2160267	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2302632	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4424141	0.96[ASN][1000 genomes]
rs6460894	0.83[ASN][1000 genomes]
rs6966602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6967026	0.95[ASN][1000 genomes]
rs6969722	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929637	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10236369	TMEM106B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12252000-12285400	Weak transcription	Spleen	Spleen
2	chr7:12252400-12281600	Weak transcription	HSMMtube	muscle
3	chr7:12252400-12284000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:12259800-12283600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:12270000-12284400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:12271800-12289000	Weak transcription	HSMM	muscle
7	chr7:12278000-12283800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:12278400-12281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:12278600-12284600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:12278800-12283600	Weak transcription	A549	lung
11	chr7:12279000-12282200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:12279000-12284400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:12279200-12281000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:12279400-12281000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:12279400-12281800	Weak transcription	Placenta	Placenta
16	chr7:12279800-12283600	Weak transcription	Liver	Liver
17	chr7:12280000-12295000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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