Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39638958..39641769-chr7:39651985..39654836,2	K562	blood:
2	chr7:39638996..39641307-chr7:39643111..39644755,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10245247	0.89[EUR][1000 genomes]
rs10258946	0.89[EUR][1000 genomes]
rs10266149	0.89[EUR][1000 genomes]
rs10486798	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs10486800	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17416652	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17507685	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17507748	1.00[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17508696	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs17712902	1.00[ASW][hapmap]
rs1989533	0.84[EUR][1000 genomes]
rs2329459	0.81[EUR][1000 genomes]
rs2329462	1.00[CEU][hapmap]
rs2329463	1.00[CEU][hapmap]
rs4723881	0.89[EUR][1000 genomes]
rs4723882	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs4723883	1.00[CEU][hapmap]
rs4723884	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs6968742	1.00[CEU][hapmap]
rs7777173	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7796063	1.00[CEU][hapmap]
rs7801411	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7807233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39629600-39640400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:39629600-39641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:39632600-39646000	Weak transcription	K562	blood
4	chr7:39632800-39641600	Weak transcription	Osteobl	bone
5	chr7:39633200-39641400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:39634000-39640400	Weak transcription	HSMM	muscle
7	chr7:39634000-39641600	Weak transcription	HSMMtube	muscle
8	chr7:39635200-39640400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:39635200-39640400	Weak transcription	NHDF-Ad	bronchial
10	chr7:39638400-39646400	Weak transcription	Stomach Mucosa	stomach

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