Variant report

Variant	rs10237437
Chromosome Location	chr7:63353662-63353663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-4	chr7:63353543-63353664	ENSG00000236299
2	lnc-ZNF680-4	chr7:63353543-63353664	ENSG00000236299.3
3	lnc-ZNF680-4	chr7:63353543-63353664	ENSG00000236299.3
4	lnc-ZNF680-4	chr7:63353543-63353664	ENSG00000236299.3
5	lnc-ZNF680-4	chr7:63353543-63353664	ENSG00000236299.3
6	lnc-ZNF680-4	chr7:63353543-63353856	ENSG00000236299.3

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10225389	0.85[AFR][1000 genomes]
rs10228063	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10239744	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10263768	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10267610	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10276565	0.84[AFR][1000 genomes]
rs10280778	0.83[AFR][1000 genomes]
rs13437751	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13437753	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877650	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2056007	0.84[AFR][1000 genomes]
rs2056008	0.85[AFR][1000 genomes]
rs2137708	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28406041	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2901969	0.83[AFR][1000 genomes]
rs4717156	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4717937	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4717939	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55680273	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55784883	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73123081	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73123084	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73123099	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7784101	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7807593	0.81[AFR][1000 genomes]
rs9691852	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv524380	chr7:63346886-63361078	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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