Variant report

Variant	rs10237887
Chromosome Location	chr7:150066900-150066901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150064930-150072034	GM12878	blood:	n/a	n/a
2	RCOR1	chr7:150066320-150066988	HepG2	liver:	n/a	n/a
3	POU2F2	chr7:150064993-150066988	GM12878	blood:	n/a	chr7:150066155-150066167
4	FOXM1	chr7:150066357-150066995	GM12878	blood:	n/a	n/a
5	ATF2	chr7:150065651-150067011	GM12878	blood:	n/a	n/a
6	POLR2A	chr7:150065018-150068478	GM12878	blood:	n/a	n/a
7	NFIC	chr7:150066153-150066915	GM12878	blood:	n/a	n/a
8	POLR2A	chr7:150065024-150068774	GM12892	blood:	n/a	n/a
9	MYC	chr7:150064768-150067169	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
10	POLR2A	chr7:150065045-150069575	GM18526	blood:	n/a	n/a
11	POLR2A	chr7:150065011-150067302	Raji	blood:	n/a	n/a
12	TCF12	chr7:150064843-150067004	A549	lung:	n/a	chr7:150066360-150066370 chr7:150066361-150066368 chr7:150066393-150066401 chr7:150065721-150065731
13	POLR2A	chr7:150064961-150067671	GM12891	blood:	n/a	n/a
14	TAF1	chr7:150066127-150066910	H1-neurons	neurons:	n/a	n/a
15	RFX5	chr7:150065054-150066937	HepG2	liver:	n/a	chr7:150065692-150065701 chr7:150065686-150065703 chr7:150065687-150065702 chr7:150065690-150065704 chr7:150065285-150065294 chr7:150065684-150065699 chr7:150065687-150065702 chr7:150065687-150065702
16	POLR2A	chr7:150064996-150067328	HUVEC	blood vessel:	n/a	n/a
17	STAT5A	chr7:150066016-150066947	GM12878	blood:	n/a	chr7:150066743-150066755 chr7:150066159-150066171 chr7:150066628-150066636
18	MXI1	chr7:150064977-150067049	GM12878	blood:	n/a	chr7:150065688-150065703 chr7:150065860-150065869 chr7:150065686-150065701
19	ELK1	chr7:150066773-150066960	K562	blood:	n/a	n/a
20	RUNX3	chr7:150064952-150067149	GM12878	blood:	n/a	chr7:150065178-150065195
21	HMGN3	chr7:150066822-150067018	K562	blood:	n/a	n/a
22	POLR2A	chr7:150065010-150072093	GM12878	blood:	n/a	n/a
23	MAX	chr7:150064864-150066921	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
24	CHD2	chr7:150065080-150066923	K562	blood:	n/a	chr7:150066669-150066679
25	MAX	chr7:150064815-150067189	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
26	MAX	chr7:150064788-150066917	HCT-116	colon:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
27	MAX	chr7:150064845-150067148	HepG2	liver:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
28	CTCF	chr7:150066800-150066950	AG09319	gingival:	n/a	n/a
29	POLR2A	chr7:150064939-150068709	GM12878	blood:	n/a	n/a
30	CBX3	chr7:150064943-150066921	K562	blood:	n/a	n/a
31	ELF1	chr7:150065056-150067085	GM12878	blood:	n/a	n/a
32	POLR2A	chr7:150065058-150068789	K562	blood:	n/a	n/a
33	STAT5A	chr7:150066138-150066907	K562	blood:	n/a	chr7:150066743-150066755 chr7:150066159-150066171 chr7:150066628-150066636
34	TAF1	chr7:150066456-150066925	GM12878	blood:	n/a	n/a
35	POLR2A	chr7:150064808-150069359	K562	blood:	n/a	n/a
36	MAX	chr7:150064984-150066902	MCF-7	breast:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
37	POLR2A	chr7:150065044-150070916	GM19193	blood:	n/a	n/a
38	MAX	chr7:150064861-150066929	ECC-1	luminal epithelium:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
39	RELA	chr7:150064925-150066932	GM19099	blood:	n/a	chr7:150066482-150066491 chr7:150066482-150066491
40	POLR2A	chr7:150065055-150067051	ECC-1	luminal epithelium:	n/a	n/a
41	HEY1	chr7:150065012-150066943	HepG2	liver:	n/a	chr7:150065245-150065260 chr7:150065724-150065739
42	POLR2A	chr7:150064841-150068822	HL-60	blood:	n/a	n/a
43	MAX	chr7:150064989-150067173	K562	blood:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
44	SPI1	chr7:150066273-150066968	HL-60	blood:	n/a	chr7:150066409-150066422
45	RCOR1	chr7:150066458-150067055	K562	blood:	n/a	n/a
46	MXI1	chr7:150064165-150068175	SK-N-SH	brain:	n/a	chr7:150068088-150068103 chr7:150065688-150065703 chr7:150065860-150065869 chr7:150068090-150068105 chr7:150065686-150065701
47	POLR2A	chr7:150066375-150067030	GM12891	blood:	n/a	n/a
48	POLR2A	chr7:150066888-150067178	HUVEC	blood vessel:	n/a	n/a
49	POLR2A	chr7:150065440-150067651	GM12891	blood:	n/a	n/a
50	SIN3AK20	chr7:150065273-150066902	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150064606..150067565-chr7:150746513..150748694,2	MCF-7	breast:
2	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
3	chr7:150034163..150038835-chr7:150063325..150067223,6	MCF-7	breast:
4	chr7:150016171..150021897-chr7:150062899..150068795,19	MCF-7	breast:
5	chr7:150018458..150023402-chr7:150064103..150067772,7	MCF-7	breast:
6	chr7:150066102..150068231-chr7:150757822..150759698,2	MCF-7	breast:
7	chr7:150017186..150022010-chr7:150063447..150067622,10	K562	blood:
8	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:
9	chr7:150017186..150022141-chr7:150063447..150068849,12	K562	blood:
10	chr7:149570954..149573807-chr7:150065336..150068583,3	MCF-7	breast:
11	chr7:150065484..150068056-chr7:150811875..150813765,2	MCF-7	breast:
12	chr7:150038539..150040315-chr7:150063994..150067487,3	MCF-7	breast:
13	chr7:150025749..150027399-chr7:150065902..150067517,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF775-1	chr7:150066760-150067691	NONHSAT124115
2	lnc-ZNF775-1	chr7:150066760-150067223	NONHSAT124116
3	lnc-ZNF775-1	chr7:150066760-150067500	NONHSAT124117
4	lnc-ZNF775-1	chr7:150066760-150067133	NONHSAT124114

Variant related genes	Relation type
REPIN1	TF binding region
ENSG00000106526	Chromatin interaction
ENSG00000133612	Chromatin interaction
ENSG00000106538	Chromatin interaction
ENSG00000213199	Chromatin interaction
ENSG00000188707	Chromatin interaction
ENSG00000171130	Chromatin interaction
ENSG00000164889	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000127399	Chromatin interaction
ENSG00000261305	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10263613	1.00[EUR][1000 genomes]
rs28681607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973612	0.94[EUR][1000 genomes]
rs7800164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv889459	chr7:150041610-150071464	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
17	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
18	nsv889460	chr7:150060163-150079459	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv889461	chr7:150060163-150081485	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
20	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150064600-150067800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr7:150064800-150067600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:150065000-150067000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:150065000-150067000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr7:150065000-150067000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:150065000-150067000	Active TSS	HSMM	muscle
7	chr7:150065000-150068400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr7:150065200-150067000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr7:150065200-150067000	Active TSS	Fetal Kidney	kidney
10	chr7:150065200-150067000	Active TSS	Gastric	stomach
11	chr7:150065200-150067000	Active TSS	Ovary	ovary
12	chr7:150065200-150067200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:150065200-150067400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr7:150065400-150067000	Active TSS	A549	lung
15	chr7:150065400-150067200	Active TSS	Sigmoid Colon	Sigmoid Colon
16	chr7:150065400-150067200	Active TSS	GM12878-XiMat	blood
17	chr7:150065400-150067200	Active TSS	HepG2	liver
18	chr7:150065400-150067400	Active TSS	Small Intestine	intestine
19	chr7:150065400-150073600	Transcr. at gene 5' and 3'	Dnd41	blood
20	chr7:150066000-150067600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:150066200-150067000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr7:150066200-150067000	Flanking Active TSS	Placenta	Placenta
23	chr7:150066200-150067000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr7:150066200-150067200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr7:150066200-150067200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr7:150066200-150067200	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr7:150066200-150067200	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr7:150066200-150067200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr7:150066200-150067200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
30	chr7:150066200-150067200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:150066200-150067200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:150066200-150067200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:150066200-150067400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr7:150066200-150067400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:150066200-150067600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr7:150066200-150067800	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr7:150066200-150067800	Flanking Active TSS	Fetal Thymus	thymus
38	chr7:150066200-150068000	Flanking Active TSS	Colonic Mucosa	Colon
39	chr7:150066200-150069200	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
40	chr7:150066400-150067000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr7:150066400-150067000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:150066400-150067000	Active TSS	Right Atrium	heart
43	chr7:150066400-150067200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:150066400-150067200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr7:150066400-150067200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:150066400-150067200	Flanking Active TSS	Fetal Brain Male	brain
47	chr7:150066400-150067200	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr7:150066400-150067400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr7:150066400-150067400	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr7:150066400-150067400	Flanking Active TSS	NHEK	skin

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