Variant report

Variant	rs10237984
Chromosome Location	chr7:69298131-69298132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10950194	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12672441	0.82[ASN][1000 genomes]
rs4718905	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4718908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458782	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62458788	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69288200-69304800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69288600-69304800	Weak transcription	Ovary	ovary
3	chr7:69290400-69302400	Weak transcription	Fetal Stomach	stomach
4	chr7:69291000-69299400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:69291200-69299000	Weak transcription	Fetal Brain Female	brain
6	chr7:69292400-69299200	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:69293200-69299200	Weak transcription	Fetal Lung	lung
8	chr7:69293200-69299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:69293200-69302000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:69293400-69299000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:69293400-69299000	Weak transcription	Thymus	Thymus
12	chr7:69293400-69299400	Weak transcription	Fetal Thymus	thymus
13	chr7:69293600-69304400	Weak transcription	Primary B cells from cord blood	blood
14	chr7:69293600-69310800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:69295800-69298200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:69296200-69302200	Weak transcription	Brain Germinal Matrix	brain
17	chr7:69296400-69302400	Weak transcription	Brain Substantia Nigra	brain
18	chr7:69296400-69304600	Weak transcription	Brain Anterior Caudate	brain
19	chr7:69296600-69299000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:69296600-69304800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:69296800-69299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:69297200-69299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:69297200-69300600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:69297400-69302400	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:69297600-69299000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:69297600-69299000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:69297600-69301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:69297600-69302000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:69297600-69302000	Weak transcription	NH-A	brain
30	chr7:69297800-69299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:69297800-69299000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:69297800-69299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:69298000-69299000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:69298000-69299000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:69298000-69299200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:69298000-69299200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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