Variant report

Variant	rs10238083
Chromosome Location	chr7:87721928-87721929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10081280	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10228892	0.96[YRI][hapmap]
rs10250115	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10262528	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12539024	0.96[YRI][hapmap]
rs12704382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885885	0.80[MKK][hapmap];0.92[YRI][hapmap]
rs2282952	0.80[MKK][hapmap];0.92[YRI][hapmap]
rs28521861	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56838313	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57000676	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60513608	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60532086	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6954770	0.92[YRI][hapmap]
rs73202374	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87717800-87725400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:87718600-87722200	Enhancers	Fetal Lung	lung
3	chr7:87719200-87722200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:87719200-87722200	Enhancers	Adipose Nuclei	Adipose
5	chr7:87720400-87722200	Enhancers	Dnd41	blood
6	chr7:87720600-87724200	Weak transcription	GM12878-XiMat	blood
7	chr7:87720600-87724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:87720600-87731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:87721000-87724200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:87721400-87722000	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:87721400-87723800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:87721600-87722000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:87721600-87722200	Enhancers	Brain Hippocampus Middle	brain
14	chr7:87721800-87722200	Enhancers	Fetal Brain Female	brain
15	chr7:87721800-87724000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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