Variant report

Variant	rs10238500
Chromosome Location	chr7:103087141-103087142
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:103086991-103087141	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F6	chr7:103085407-103087220	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr7:103087120-103087270	HA-sp	spinal cord:	n/a	n/a
4	TCF12	chr7:103086443-103087157	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102936543..102939393-chr7:103085608..103089565,4	MCF-7	breast:

Variant related genes	Relation type
SLC26A5	TF binding region
ENSG00000105819	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10245834	0.84[AFR][1000 genomes]
rs10248886	0.84[AFR][1000 genomes]
rs10252434	0.89[AFR][1000 genomes]
rs10268890	0.81[AFR][1000 genomes]
rs28532043	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103085400-103087200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:103085600-103087200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:103085800-103087200	Bivalent Enhancer	Fetal Thymus	thymus
4	chr7:103086400-103087200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr7:103086400-103088000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr7:103086600-103087200	Bivalent Enhancer	Brain Germinal Matrix	brain
7	chr7:103086600-103087400	Weak transcription	Gastric	stomach
8	chr7:103086800-103087200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
9	chr7:103086800-103087400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:103087000-103087200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr7:103087000-103087200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
12	chr7:103087000-103087600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:103087000-103087600	Enhancers	Colonic Mucosa	Colon
14	chr7:103087000-103087600	Weak transcription	K562	blood
15	chr7:103087000-103087800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr7:103087000-103087800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr7:103087000-103087800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
18	chr7:103087000-103087800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
19	chr7:103087000-103087800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:103087000-103088000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:103087000-103088000	Bivalent Enhancer	Primary T cells from cord blood	blood
22	chr7:103087000-103088000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:103087000-103088000	Enhancers	Brain Substantia Nigra	brain
24	chr7:103087000-103088000	Bivalent Enhancer	HepG2	liver
25	chr7:103087000-103088200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr7:103087000-103088600	Weak transcription	Right Atrium	heart

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