Variant report

Variant	rs10238945
Chromosome Location	chr7:21947138-21947139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21938917..21941313-chr7:21945922..21947681,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10261104	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MKK][hapmap];0.88[ASN][1000 genomes]
rs10269223	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2893060	1.00[CHB][hapmap]
rs35898649	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10238945	CYCS	cis	parietal	SCAN

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21932600-21951000	Weak transcription	HSMM	muscle
2	chr7:21933000-21963200	Weak transcription	A549	lung
3	chr7:21934000-21950400	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:21934200-21951600	Weak transcription	Fetal Brain Male	brain
5	chr7:21936600-21956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:21936600-21956600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:21937000-21952200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:21937000-21956400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:21937200-21956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:21937400-21950800	Weak transcription	Right Atrium	heart
11	chr7:21937400-21956000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:21937600-21952000	Weak transcription	Psoas Muscle	Psoas
13	chr7:21937600-21952800	Strong transcription	Thymus	Thymus
14	chr7:21937600-21956200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:21937600-21956400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:21937800-21947800	Strong transcription	NHEK	skin
17	chr7:21937800-21950200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr7:21937800-21950600	Strong transcription	Fetal Stomach	stomach
19	chr7:21937800-21954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:21937800-21956000	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr7:21937800-21956200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:21938000-21949600	Strong transcription	Fetal Muscle Leg	muscle
23	chr7:21938000-21955000	Weak transcription	Stomach Mucosa	stomach
24	chr7:21938000-21956200	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr7:21938200-21949200	Strong transcription	Hela-S3	cervix
26	chr7:21938200-21950000	Weak transcription	Small Intestine	intestine
27	chr7:21938400-21948600	Strong transcription	Rectal Smooth Muscle	rectum
28	chr7:21938400-21949000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr7:21938400-21950200	Strong transcription	Ovary	ovary
30	chr7:21938600-21947200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:21938600-21948800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:21938600-21950600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:21938800-21952200	Strong transcription	Primary B cells from cord blood	blood
35	chr7:21938800-21952200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:21938800-21953200	Strong transcription	Fetal Thymus	thymus
37	chr7:21938800-21956600	Strong transcription	Primary T cells from cord blood	blood
38	chr7:21939000-21948400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:21939000-21952000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr7:21939200-21947800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:21939400-21951800	Strong transcription	Primary hematopoietic stem cells	blood
42	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:21939400-21952200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:21939600-21947400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:21939600-21948600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:21940000-21949000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr7:21940200-21948600	Strong transcription	Lung	lung
48	chr7:21940200-21949000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:21940200-21950200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr7:21940200-21952200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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