Variant report

Variant	rs10239022
Chromosome Location	chr7:120889406-120889407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10229865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10244847	1.00[EUR][1000 genomes]
rs10278685	0.85[AFR][1000 genomes]
rs10441247	1.00[EUR][1000 genomes]
rs12532183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13438373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16870557	1.00[EUR][1000 genomes]
rs17143165	1.00[EUR][1000 genomes]
rs17143170	1.00[EUR][1000 genomes]
rs17143176	1.00[EUR][1000 genomes]
rs17143179	1.00[EUR][1000 genomes]
rs17143205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28563150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584526	0.85[AFR][1000 genomes]
rs41366144	1.00[EUR][1000 genomes]
rs61266507	0.85[AFR][1000 genomes]
rs798912	1.00[EUR][1000 genomes]
rs798916	1.00[EUR][1000 genomes]
rs798919	1.00[EUR][1000 genomes]
rs798920	1.00[EUR][1000 genomes]
rs798921	1.00[EUR][1000 genomes]
rs798922	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs798923	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs798924	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1030792	chr7:120662815-120917533	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1019025	chr7:120667937-120918696	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv539100	chr7:120667937-120918696	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428506	chr7:120719434-120891759	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv427802	chr7:120749159-120935856	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv889122	chr7:120860912-120906744	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120872600-120936600	Weak transcription	Psoas Muscle	Psoas
2	chr7:120884600-120889600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:120885000-120889600	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:120885200-120889800	Strong transcription	HSMM	muscle
5	chr7:120886400-120889600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:120886600-120910600	Weak transcription	Fetal Kidney	kidney
7	chr7:120887200-120906400	Weak transcription	HSMMtube	muscle
8	chr7:120888000-120889600	Strong transcription	NHDF-Ad	bronchial
9	chr7:120888000-120889800	ZNF genes & repeats	Liver	Liver
10	chr7:120888400-120901600	Weak transcription	Left Ventricle	heart
11	chr7:120888400-120906200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120888400-120906400	Weak transcription	NHLF	lung
13	chr7:120888400-120910000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:120888600-120905600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:120888600-120905600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:120888600-120906400	Weak transcription	Aorta	Aorta
17	chr7:120888600-120907800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:120888600-120907800	Weak transcription	Right Ventricle	heart
19	chr7:120888600-120908000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:120888600-120908200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:120888800-120889800	Strong transcription	Adipose Nuclei	Adipose
22	chr7:120888800-120937800	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:120889400-120893400	Weak transcription	K562	blood

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