Variant report

Variant	rs10239712
Chromosome Location	chr7:5091689-5091690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr7:5091297-5091791	U2OS	brain:	n/a	n/a
2	KAP1	chr7:5091298-5091821	HEK293	kidney:	n/a	n/a
3	KAP1	chr7:5091027-5091861	K562	blood:	n/a	n/a
4	CBX3	chr7:5091333-5091716	K562	blood:	n/a	n/a
5	USF1	chr7:5091353-5091767	A549	lung:	n/a	n/a
6	CBX3	chr7:5091349-5091707	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:5090099..5092936-chr7:5106138..5109112,2	K562	blood:
2	chr7:5090004..5092198-chr7:5096546..5098807,2	K562	blood:
3	chr7:5087201..5088728-chr7:5090888..5093337,2	K562	blood:

Variant related genes	Relation type
RBAK	TF binding region
ENSG00000146587	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10230182	1.00[EUR][1000 genomes]
rs10243342	1.00[EUR][1000 genomes]
rs10266306	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276251	1.00[EUR][1000 genomes]
rs10951826	1.00[EUR][1000 genomes]
rs28405351	1.00[AMR][1000 genomes]
rs28885378	1.00[EUR][1000 genomes]
rs28885797	1.00[EUR][1000 genomes]
rs4557607	1.00[EUR][1000 genomes]
rs55784412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
8	nsv1019120	chr7:4929653-5138409	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv917078	chr7:4962123-5151633	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv966749	chr7:5036761-5098568	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv1029430	chr7:5053887-5223583	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	nsv1034446	chr7:5066181-5108770	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1025644	chr7:5066181-5114089	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv1032880	chr7:5066181-5205932	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv1030384	chr7:5066181-5210555	Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv966925	chr7:5089807-5098568	Strong transcription ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5086400-5092400	Weak transcription	Pancreas	Pancrea
2	chr7:5086400-5094000	Weak transcription	Small Intestine	intestine
3	chr7:5086400-5096800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:5086400-5101400	Weak transcription	Stomach Mucosa	stomach
5	chr7:5086600-5097200	Weak transcription	NHLF	lung
6	chr7:5086800-5109200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:5087400-5092800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:5087400-5094800	Weak transcription	Gastric	stomach
9	chr7:5087400-5095000	Weak transcription	Hela-S3	cervix
10	chr7:5087400-5097200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:5088200-5093000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:5088200-5107400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:5088200-5111400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:5088400-5092600	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr7:5088400-5098600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:5088400-5108800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr7:5088400-5109600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr7:5088600-5091800	Strong transcription	HSMM	muscle
19	chr7:5088600-5091800	Strong transcription	NH-A	brain
20	chr7:5088600-5108600	ZNF genes & repeats	Dnd41	blood
21	chr7:5088800-5095800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:5088800-5098800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:5088800-5100200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:5088800-5107200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:5089000-5092800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:5089200-5108800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr7:5089200-5110400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr7:5089400-5092000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:5089400-5092000	ZNF genes & repeats	A549	lung
30	chr7:5089400-5099200	Strong transcription	Left Ventricle	heart
31	chr7:5089400-5105200	ZNF genes & repeats	GM12878-XiMat	blood
32	chr7:5089400-5107600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr7:5089400-5110200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:5089600-5093600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr7:5089600-5094200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:5089600-5095600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:5089600-5108400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr7:5089600-5110400	ZNF genes & repeats	Liver	Liver
39	chr7:5089800-5092000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
40	chr7:5089800-5096400	Weak transcription	Right Ventricle	heart
41	chr7:5090000-5092000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:5090000-5092000	ZNF genes & repeats	HepG2	liver
43	chr7:5090000-5092000	ZNF genes & repeats	NHEK	skin
44	chr7:5090000-5093600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
45	chr7:5090000-5094200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr7:5090000-5095000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
47	chr7:5090000-5095600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
48	chr7:5090200-5091800	ZNF genes & repeats	Primary T cells from cord blood	blood
49	chr7:5090200-5092800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:5090200-5093000	Weak transcription	HMEC	breast

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