Variant report

Variant	rs10240144
Chromosome Location	chr7:78175906-78175907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12538564	1.00[CHB][hapmap]
rs12539285	1.00[CHB][hapmap]
rs17150925	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17150942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6963700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6968852	1.00[CHB][hapmap]
rs6977883	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2761339	chr7:78162153-78176756	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78158800-78191000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:78172200-78183000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78172600-78176000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:78173000-78176000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78173000-78178000	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78173800-78187600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:78175600-78176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:78175600-78177200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:78175800-78176400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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