Variant report

Variant	rs10241266
Chromosome Location	chr7:78105797-78105798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10241491	0.81[AMR][1000 genomes]
rs10257012	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10485898	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11763843	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12705479	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12705480	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1990579	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6466241	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6466242	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6651114	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7794954	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7806044	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7808641	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9691175	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9886106	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78099800-78106200	Weak transcription	Brain Angular Gyrus	brain
2	chr7:78102200-78108200	Weak transcription	Ovary	ovary
3	chr7:78102600-78106400	Weak transcription	HSMMtube	muscle
4	chr7:78103000-78117600	Weak transcription	Fetal Brain Female	brain
5	chr7:78103200-78105800	Weak transcription	HSMM	muscle
6	chr7:78103200-78106000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:78103400-78108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:78103400-78108600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:78103800-78115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:78104400-78106600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:78104400-78116800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:78105000-78106600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:78105400-78105800	Weak transcription	Fetal Heart	heart
14	chr7:78105400-78106600	Enhancers	Osteobl	bone
15	chr7:78105600-78106000	Weak transcription	Brain Anterior Caudate	brain
16	chr7:78105600-78106800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:78105600-78113800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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