Variant report

Variant	rs10241390
Chromosome Location	chr7:11670811-11670812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10238066	1.00[AMR][1000 genomes]
rs10249723	1.00[AMR][1000 genomes]
rs10250764	1.00[AMR][1000 genomes]
rs10278390	1.00[AMR][1000 genomes]
rs10278509	1.00[AMR][1000 genomes]
rs28400296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698974	1.00[AMR][1000 genomes]
rs28711087	1.00[AMR][1000 genomes]
rs6952772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11660800-11681400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:11664200-11671200	Weak transcription	Fetal Lung	lung
3	chr7:11665200-11675400	Weak transcription	Placenta	Placenta
4	chr7:11665800-11671200	Weak transcription	Liver	Liver
5	chr7:11667000-11678200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:11669600-11673000	Weak transcription	Fetal Stomach	stomach
7	chr7:11670400-11671000	Enhancers	Ovary	ovary
8	chr7:11670400-11671600	Enhancers	Right Atrium	heart
9	chr7:11670600-11671600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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