Variant report

Variant	rs10241611
Chromosome Location	chr7:147280338-147280339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10226112	0.82[EUR][1000 genomes]
rs10226376	0.82[EUR][1000 genomes]
rs10226389	0.82[EUR][1000 genomes]
rs10226510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227024	0.81[EUR][1000 genomes]
rs10236087	0.82[EUR][1000 genomes]
rs10237202	0.82[EUR][1000 genomes]
rs10240182	0.82[EUR][1000 genomes]
rs10243163	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10243306	0.82[EUR][1000 genomes]
rs10244825	0.82[EUR][1000 genomes]
rs10245208	0.82[EUR][1000 genomes]
rs10246304	0.82[EUR][1000 genomes]
rs10250480	0.82[EUR][1000 genomes]
rs10255433	0.82[EUR][1000 genomes]
rs10279095	0.82[EUR][1000 genomes]
rs10280326	0.81[EUR][1000 genomes]
rs10281966	0.82[EUR][1000 genomes]
rs10952697	0.81[EUR][1000 genomes]
rs1157300	0.80[EUR][1000 genomes]
rs1157301	0.81[EUR][1000 genomes]
rs1157302	0.81[EUR][1000 genomes]
rs12669822	0.80[AMR][1000 genomes]
rs2051873	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2051875	0.81[EUR][1000 genomes]
rs2107860	0.82[EUR][1000 genomes]
rs2107861	0.81[EUR][1000 genomes]
rs2158640	0.82[EUR][1000 genomes]
rs2189998	0.81[EUR][1000 genomes]
rs2189999	0.80[EUR][1000 genomes]
rs2373103	0.82[EUR][1000 genomes]
rs2373104	0.82[EUR][1000 genomes]
rs28654757	0.84[EUR][1000 genomes]
rs5003022	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5003023	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5006631	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6464826	0.82[EUR][1000 genomes]
rs6464827	0.82[EUR][1000 genomes]
rs6464828	0.82[EUR][1000 genomes]
rs6464829	0.82[EUR][1000 genomes]
rs6943922	0.81[EUR][1000 genomes]
rs6943947	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6947921	0.81[EUR][1000 genomes]
rs6947944	0.80[EUR][1000 genomes]
rs6973502	0.80[EUR][1000 genomes]
rs6975276	0.81[EUR][1000 genomes]
rs727640	0.81[EUR][1000 genomes]
rs727641	0.82[EUR][1000 genomes]
rs7459220	0.82[EUR][1000 genomes]
rs7780313	0.81[EUR][1000 genomes]
rs7805454	0.82[EUR][1000 genomes]
rs7805615	0.82[EUR][1000 genomes]
rs7811105	0.81[EUR][1000 genomes]
rs985828	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs985829	0.81[EUR][1000 genomes]
rs989241	0.80[EUR][1000 genomes]
rs989242	0.80[EUR][1000 genomes]
rs989243	0.81[EUR][1000 genomes]
rs995890	0.82[EUR][1000 genomes]
rs995891	0.82[EUR][1000 genomes]
rs995892	0.82[EUR][1000 genomes]
rs995893	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv19066	chr7:147271448-147285044	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv1824789	chr7:147277640-147294703	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv608955	chr7:147279175-147282327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv608956	chr7:147279175-147283018	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv608957	chr7:147279175-147283342	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv608958	chr7:147279947-147282327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv608959	chr7:147280000-147283018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv608960	chr7:147280317-147283018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147268000-147283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147278400-147283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links