Variant report
| Variant | rs10241627 |
|---|---|
| Chromosome Location | chr7:25380703-25380704 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10228419 | 0.83[ASN][1000 genomes] |
| rs10234203 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10234894 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10234895 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10263854 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10279348 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10951068 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12539007 | 0.83[ASN][1000 genomes] |
| rs12700615 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17151393 | 0.81[ASN][1000 genomes] |
| rs17151394 | 0.81[ASN][1000 genomes] |
| rs1859095 | 0.81[ASN][1000 genomes] |
| rs2214310 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2391110 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34771412 | 0.82[ASN][1000 genomes] |
| rs35258643 | 0.82[ASN][1000 genomes] |
| rs4719807 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4722456 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4722457 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62451655 | 0.81[ASN][1000 genomes] |
| rs62451656 | 0.81[ASN][1000 genomes] |
| rs62451657 | 0.80[ASN][1000 genomes] |
| rs7795823 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9655257 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9655258 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9655259 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs994531 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606424 | chr7:24982529-25466521 | Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv606426 | chr7:25254125-25621579 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv887846 | chr7:25371700-25407621 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv464411 | chr7:25377488-25382023 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv606430 | chr7:25377488-25382023 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10241627 | HIBADH | cis | parietal | SCAN |
| rs10241627 | CREB5 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25376800-25386800 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr7:25378800-25383000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
