Variant report

Variant	rs10242208
Chromosome Location	chr7:139355151-139355152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:40716312..40717039-chr7:139354686..139355422,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12333516	1.00[EUR][1000 genomes]
rs17161151	1.00[EUR][1000 genomes]
rs28508100	1.00[EUR][1000 genomes]
rs58632561	1.00[EUR][1000 genomes]
rs9692210	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805252	chr7:139347318-139370544	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139333400-139358000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:139340400-139360200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:139343800-139355400	Enhancers	Brain Substantia Nigra	brain
4	chr7:139343800-139358200	Weak transcription	Fetal Thymus	thymus
5	chr7:139344000-139367200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:139345600-139356800	Weak transcription	GM12878-XiMat	blood
7	chr7:139345600-139359000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:139345600-139360200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:139345600-139364800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:139346000-139358200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:139346200-139357600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:139346200-139359400	Weak transcription	NH-A	brain
13	chr7:139346200-139359600	Weak transcription	Osteobl	bone
14	chr7:139346200-139364200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:139346200-139364800	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:139346200-139365000	Weak transcription	Aorta	Aorta
17	chr7:139346200-139372800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:139346600-139356400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:139346600-139364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:139346800-139357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:139347000-139357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:139347000-139358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:139347000-139359000	Weak transcription	HSMM	muscle
24	chr7:139347200-139358000	Weak transcription	Fetal Stomach	stomach
25	chr7:139347200-139364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:139347800-139358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:139347800-139360000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:139347800-139365000	Weak transcription	Esophagus	oesophagus
29	chr7:139348000-139357800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:139348200-139363800	Weak transcription	HUVEC	blood vessel
31	chr7:139348200-139364400	Weak transcription	Small Intestine	intestine
32	chr7:139348200-139365400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:139348200-139367200	Weak transcription	Colonic Mucosa	Colon
34	chr7:139348400-139358000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:139348800-139356400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:139348800-139356800	Weak transcription	A549	lung
37	chr7:139348800-139358000	Weak transcription	Fetal Intestine Small	intestine
38	chr7:139348800-139359200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:139348800-139359400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr7:139348800-139360200	Weak transcription	Right Ventricle	heart
41	chr7:139348800-139364800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:139348800-139364800	Weak transcription	Fetal Intestine Large	intestine
43	chr7:139349000-139358000	Weak transcription	Gastric	stomach
44	chr7:139349800-139358000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr7:139349800-139360200	Weak transcription	Adipose Nuclei	Adipose
46	chr7:139350000-139359600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:139350400-139358000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:139350600-139359200	Weak transcription	Lung	lung
49	chr7:139350800-139357800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:139351200-139358000	Weak transcription	Right Atrium	heart

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