Variant report

Variant	rs10243605
Chromosome Location	chr7:50820985-50820986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50820026..50825124-chr7:50858182..50862797,5	K562	blood:

Variant related genes	Relation type
ENSG00000106070	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17152128	0.87[AMR][1000 genomes]
rs2329425	0.89[AMR][1000 genomes]
rs28495293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59447685	0.87[AMR][1000 genomes]
rs61365130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50798600-50822600	Weak transcription	Ovary	ovary
2	chr7:50798800-50824800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:50798800-50832400	Weak transcription	HSMM	muscle
4	chr7:50798800-50837200	Weak transcription	HSMMtube	muscle
5	chr7:50799000-50823000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50802600-50824000	Weak transcription	NH-A	brain
7	chr7:50807600-50821800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:50807800-50821800	Weak transcription	Esophagus	oesophagus
9	chr7:50807800-50834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:50808000-50821200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:50808000-50821600	Weak transcription	Gastric	stomach
12	chr7:50808000-50827200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:50808000-50829400	Weak transcription	Small Intestine	intestine
14	chr7:50808000-50832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:50808000-50835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:50808200-50834200	Weak transcription	Brain Angular Gyrus	brain
17	chr7:50809000-50821400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:50809400-50822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:50810800-50821200	Weak transcription	Primary T cells from cord blood	blood
20	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:50810800-50829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:50811000-50829400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:50811400-50821600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:50811600-50821000	Weak transcription	Fetal Intestine Large	intestine
25	chr7:50812200-50822600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:50812600-50828200	Weak transcription	K562	blood
27	chr7:50812600-50829400	Weak transcription	NHDF-Ad	bronchial
28	chr7:50812800-50821200	Weak transcription	Osteobl	bone
29	chr7:50813800-50824600	Weak transcription	Fetal Muscle Leg	muscle
30	chr7:50814400-50824600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:50814400-50838800	Weak transcription	Adipose Nuclei	Adipose
32	chr7:50814800-50828400	Weak transcription	Fetal Brain Male	brain
33	chr7:50815000-50822400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:50815000-50834400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:50815600-50821200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:50815800-50821200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:50816000-50822400	Weak transcription	Brain Germinal Matrix	brain
38	chr7:50816000-50824800	Weak transcription	NHLF	lung
39	chr7:50816000-50825600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:50816000-50834200	Weak transcription	A549	lung
41	chr7:50816200-50821400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:50816200-50821800	Weak transcription	Lung	lung
43	chr7:50816200-50822000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:50816200-50823000	Weak transcription	Fetal Lung	lung
45	chr7:50816200-50829400	Weak transcription	Aorta	Aorta
46	chr7:50816200-50831400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:50816200-50834000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:50816200-50849600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:50816400-50821800	Weak transcription	Fetal Brain Female	brain
50	chr7:50816600-50821000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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