Variant report

Variant	rs10243710
Chromosome Location	chr7:127888250-127888251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10264361	0.82[EUR][1000 genomes]
rs2060713	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2122627	0.86[EUR][1000 genomes]
rs2167271	0.86[EUR][1000 genomes]
rs28954080	0.86[EUR][1000 genomes]
rs28954101	0.86[EUR][1000 genomes]
rs4236625	0.84[EUR][1000 genomes]
rs7788818	0.86[EUR][1000 genomes]
rs7795794	0.86[EUR][1000 genomes]
rs791603	0.80[EUR][1000 genomes]
rs791604	0.80[EUR][1000 genomes]
rs791616	0.86[EUR][1000 genomes]
rs791617	0.86[EUR][1000 genomes]
rs791620	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv429811	chr7:127857891-127889049	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127886800-127889200	Enhancers	Placenta	Placenta
2	chr7:127887200-127889600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:127887600-127894000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:127887800-127889000	Weak transcription	Adipose Nuclei	Adipose
5	chr7:127888000-127893000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:127888200-127893000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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