Variant report

Variant	rs10243804
Chromosome Location	chr7:26053497-26053498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10233792	1.00[AMR][1000 genomes]
rs10249204	1.00[AMR][1000 genomes]
rs10255282	1.00[AMR][1000 genomes]
rs28526491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58865772	1.00[AMR][1000 genomes]
rs58876328	1.00[AMR][1000 genomes]
rs60290224	1.00[AMR][1000 genomes]
rs6958604	1.00[AMR][1000 genomes]
rs73281430	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470188	chr7:26013958-26075094	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv464412	chr7:26013959-26073411	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv606434	chr7:26013959-26073411	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26051400-26053600	Enhancers	GM12878-XiMat	blood
2	chr7:26052000-26053600	Enhancers	Pancreas	Pancrea
3	chr7:26052800-26053800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:26052800-26053800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:26052800-26053800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:26053000-26053600	Enhancers	Brain Germinal Matrix	brain
7	chr7:26053000-26054000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:26053200-26053600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:26053200-26053600	Enhancers	Fetal Stomach	stomach
10	chr7:26053200-26053800	Enhancers	Fetal Muscle Leg	muscle
11	chr7:26053400-26053600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:26053400-26053600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr7:26053400-26053800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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