Variant report

Variant	rs10243933
Chromosome Location	chr7:83699487-83699488
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10488269	1.00[CEU][hapmap]
rs17158484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17158496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17158564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158642	1.00[CEU][hapmap]
rs17158647	1.00[CEU][hapmap]
rs1990046	1.00[CEU][hapmap]
rs7787696	1.00[CEU][hapmap]
rs7808547	1.00[CEU][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv523680	chr7:83698177-83699733	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
4	nsv527413	chr7:83698177-83699733	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
5	nsv508464	chr7:83698939-83714150	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83673800-83707600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:83689800-83714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83690600-83714600	Weak transcription	NHDF-Ad	bronchial
4	chr7:83690800-83702800	Weak transcription	NHLF	lung
5	chr7:83691400-83703000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:83692000-83702600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:83692200-83714600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:83698200-83701000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:83698200-83707600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:83698400-83708200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:83698600-83710400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:83698600-83715400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:83698800-83700000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:83699000-83700000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:83699400-83700400	Weak transcription	Fetal Heart	heart
16	chr7:83699400-83700600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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