Variant report

Variant	rs10244159
Chromosome Location	chr7:103260944-103260945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10245257	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11983439	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs123712	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs123713	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs123714	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12667604	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2058378	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2058379	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2109697	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2191702	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249372	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2535755	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2907929	0.82[ASN][1000 genomes]
rs362642	0.85[ASN][1000 genomes]
rs362644	0.85[ASN][1000 genomes]
rs362658	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs362688	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs362695	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757744	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808024	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823981	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9656083	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103256200-103269000	Weak transcription	K562	blood
2	chr7:103256800-103265600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:103260200-103267000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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