Variant report

Variant	rs10245585
Chromosome Location	chr7:33552621-33552622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10224676	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10232000	0.91[YRI][hapmap]
rs10235827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10238097	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251071	0.80[YRI][hapmap];0.93[AFR][1000 genomes]
rs10267018	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272151	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275218	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279696	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981868	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33540800-33568600	Weak transcription	Left Ventricle	heart
2	chr7:33541200-33554600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:33541400-33567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:33542400-33574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:33543000-33557000	Weak transcription	Gastric	stomach
6	chr7:33543400-33555000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:33543600-33552800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:33543600-33574200	Weak transcription	Ovary	ovary
9	chr7:33543800-33555800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:33545800-33554800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:33547000-33579400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:33547400-33557000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:33547600-33557800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:33551800-33554200	Weak transcription	Fetal Stomach	stomach
15	chr7:33552200-33552800	ZNF genes & repeats	Aorta	Aorta
16	chr7:33552400-33552800	ZNF genes & repeats	Pancreas	Pancrea
17	chr7:33552400-33552800	Enhancers	Psoas Muscle	Psoas
18	chr7:33552400-33553000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:33552400-33555200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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