Variant report

Variant	rs1024688
Chromosome Location	chr2:234930596-234930597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11563198	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11677046	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11681894	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11682121	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11683566	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11684714	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1354897	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395837	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395839	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395840	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17864789	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17865692	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869085	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4663349	0.90[EUR][1000 genomes]
rs61380696	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234926800-234930600	Weak transcription	Liver	Liver
2	chr2:234930200-234933000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:234930400-234930600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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