Variant report

Variant	rs1024877
Chromosome Location	chr18:25174520-25174521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1008854	0.81[EUR][1000 genomes]
rs1420959	0.81[EUR][1000 genomes]
rs16943820	0.95[CEU][hapmap]
rs2287295	0.94[AFR][1000 genomes]
rs7243150	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8099487	0.80[EUR][1000 genomes]
rs9956311	0.85[AFR][1000 genomes]
rs9960073	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25174000-25175000	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr18:25174200-25176000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:25174400-25174800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr18:25174400-25175200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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