Variant report

Variant	rs10249657
Chromosome Location	chr7:149546189-149546190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:149546174-149546564	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149545678..149549284-chr7:149555199..149560671,5	K562	blood:
2	chr7:149545730..149549860-chr7:149550271..149553318,4	K562	blood:
3	chr7:149504416..149504923-chr7:149545982..149546934,2	K562	blood:
4	chr7:149533956..149535682-chr7:149545253..149548540,3	K562	blood:
5	chr7:149503718..149504886-chr7:149546056..149546960,4	MCF-7	breast:
6	chr7:149479515..149482094-chr7:149544911..149547463,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF862	TF binding region
ENSG00000106479	Chromatin interaction
ENSG00000273419	Chromatin interaction
ENSG00000197558	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10243039	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs10243599	1.00[AMR][1000 genomes]
rs10251487	1.00[AMR][1000 genomes]
rs10262917	1.00[AMR][1000 genomes]
rs10269423	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10271885	1.00[AMR][1000 genomes]
rs28683640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv831184	chr7:149424835-149600093	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2758139	chr7:149441590-149956415	Strong transcription Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	esv2759571	chr7:149441590-149956415	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
11	nsv521861	chr7:149458623-149582906	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv889409	chr7:149458623-149585379	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv1029471	chr7:149496177-149810381	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv539193	chr7:149496177-149810381	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv1033095	chr7:149508083-149781872	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
16	nsv608987	chr7:149509981-149547703	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv1029484	chr7:149539914-149599326	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149536400-149547000	Weak transcription	Esophagus	oesophagus
2	chr7:149536400-149556400	Weak transcription	Colonic Mucosa	Colon
3	chr7:149536600-149551600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:149536800-149551400	Weak transcription	HSMMtube	muscle
5	chr7:149536800-149556400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:149537000-149551400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:149537000-149551400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:149537000-149551400	Weak transcription	Fetal Kidney	kidney
9	chr7:149537000-149551400	Weak transcription	Fetal Lung	lung
10	chr7:149537000-149551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:149537000-149551600	Weak transcription	Gastric	stomach
12	chr7:149537000-149551600	Weak transcription	NHEK	skin
13	chr7:149537000-149551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:149537000-149552000	Weak transcription	NHDF-Ad	bronchial
15	chr7:149537000-149556800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:149537200-149551400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:149537200-149551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:149539800-149551200	Weak transcription	Fetal Heart	heart
19	chr7:149540000-149546400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:149540000-149551600	Weak transcription	Pancreas	Pancrea
21	chr7:149540000-149551800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:149540000-149569600	Weak transcription	Psoas Muscle	Psoas
23	chr7:149541200-149550800	Strong transcription	Fetal Muscle Leg	muscle
24	chr7:149541400-149547600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:149541600-149550000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:149541800-149546400	Strong transcription	Brain Substantia Nigra	brain
27	chr7:149541800-149546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:149541800-149550600	Strong transcription	Stomach Smooth Muscle	stomach
29	chr7:149541800-149550800	Strong transcription	Fetal Stomach	stomach
30	chr7:149541800-149553400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:149542000-149546200	Strong transcription	Left Ventricle	heart
32	chr7:149542000-149546400	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr7:149542000-149546600	Strong transcription	Brain Anterior Caudate	brain
34	chr7:149542000-149547200	Strong transcription	Brain Germinal Matrix	brain
35	chr7:149542000-149547600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr7:149542000-149550800	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr7:149542200-149546400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:149542200-149549600	Weak transcription	Colon Smooth Muscle	Colon
39	chr7:149542400-149546200	Strong transcription	Fetal Intestine Large	intestine
40	chr7:149542400-149546400	Strong transcription	Brain Cingulate Gyrus	brain
41	chr7:149542400-149547200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:149542400-149547600	Strong transcription	Dnd41	blood
43	chr7:149542400-149551000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr7:149542400-149552200	Weak transcription	NHLF	lung
45	chr7:149542600-149548200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:149542600-149561800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr7:149543000-149569600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:149543200-149547000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:149543200-149547000	Strong transcription	Brain Angular Gyrus	brain
50	chr7:149543200-149547200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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