Variant report

Variant	rs10250035
Chromosome Location	chr7:117073950-117073951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:117071869-117075650	H1-hESC	embryonic stem cell:	embryo
2	7:115861595-115870968..7:117071869-117075650	H1-hESC	embryonic stem cell:	embryo
3	7:117071869-117075650..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo
4	7:116957165-116964911..7:117071869-117075650	H1-hESC	embryonic stem cell:	embryo
5	7:117071869-117075650..7:117251668-117255413	H1-hESC	embryonic stem cell:	embryo
6	7:117065049-117068137..7:117071869-117075650	H1-hESC	embryonic stem cell:	embryo
7	chr7:117058253..117061199-chr7:117072974..117075927,2	K562	blood:
8	chr7:117073915..117075702-chr7:117831295..117833017,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000154438	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10246528	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117073800-117074000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:117073800-117075600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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