Variant report
Variant | rs1025027 |
---|---|
Chromosome Location | chr5:52470076-52470077 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10940307 | 0.83[EUR][1000 genomes] |
rs13171110 | 0.80[EUR][1000 genomes] |
rs13175197 | 0.83[EUR][1000 genomes] |
rs1374058 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1392541 | 0.91[EUR][1000 genomes] |
rs153618 | 0.90[EUR][1000 genomes] |
rs153619 | 0.90[EUR][1000 genomes] |
rs17242004 | 0.91[EUR][1000 genomes] |
rs192262 | 0.93[EUR][1000 genomes] |
rs254146 | 0.84[EUR][1000 genomes] |
rs254198 | 0.91[EUR][1000 genomes] |
rs254199 | 0.91[EUR][1000 genomes] |
rs254503 | 0.91[EUR][1000 genomes] |
rs2548321 | 0.91[EUR][1000 genomes] |
rs34949026 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs39860 | 0.93[EUR][1000 genomes] |
rs4865762 | 0.81[EUR][1000 genomes] |
rs57244200 | 0.84[EUR][1000 genomes] |
rs6867917 | 0.92[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs977575 | 0.84[EUR][1000 genomes] |
rs977576 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949005 | chr5:52188028-52808229 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | esv2752745 | chr5:52422063-53343529 | Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:52464000-52474200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |