Variant report

Variant	rs10251080
Chromosome Location	chr7:25668011-25668012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25661025..25663705-chr7:25665924..25668424,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1502954	1.00[ASN][1000 genomes]
rs17725815	1.00[ASN][1000 genomes]
rs17726027	1.00[ASN][1000 genomes]
rs17782178	1.00[ASN][1000 genomes]
rs55840269	1.00[ASN][1000 genomes]
rs55948674	1.00[ASN][1000 genomes]
rs55957952	1.00[ASN][1000 genomes]
rs56058173	1.00[ASN][1000 genomes]
rs56300455	1.00[ASN][1000 genomes]
rs73083923	1.00[ASN][1000 genomes]
rs73083945	1.00[ASN][1000 genomes]
rs73083957	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25663400-25668800	Enhancers	Fetal Lung	lung
2	chr7:25664800-25669400	Enhancers	Brain Germinal Matrix	brain
3	chr7:25665400-25672800	Weak transcription	Aorta	Aorta
4	chr7:25665600-25669200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:25665600-25670600	Weak transcription	Right Atrium	heart
6	chr7:25666000-25668400	Weak transcription	Primary B cells from cord blood	blood
7	chr7:25666400-25675600	Weak transcription	Ovary	ovary
8	chr7:25666800-25675600	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:25667400-25668400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:25667400-25668600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:25667600-25668400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:25667600-25668600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:25667600-25668600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:25667600-25669400	Weak transcription	Fetal Stomach	stomach
15	chr7:25667800-25668200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:25667800-25668200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:25667800-25668400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr7:25667800-25668400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:25667800-25668400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:25667800-25668800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr7:25668000-25668400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:25668000-25671400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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