Variant report

Variant	rs10251915
Chromosome Location	chr7:78106093-78106094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10241491	0.83[EUR][1000 genomes]
rs10485896	0.82[GIH][hapmap]
rs12705478	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10251915	CCDC146	cis	parietal	SCAN
rs10251915	GTF2IRD1	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78099800-78106200	Weak transcription	Brain Angular Gyrus	brain
2	chr7:78102200-78108200	Weak transcription	Ovary	ovary
3	chr7:78102600-78106400	Weak transcription	HSMMtube	muscle
4	chr7:78103000-78117600	Weak transcription	Fetal Brain Female	brain
5	chr7:78103400-78108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:78103400-78108600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:78103800-78115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:78104400-78106600	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:78104400-78116800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78105000-78106600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:78105400-78106600	Enhancers	Osteobl	bone
12	chr7:78105600-78106800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:78105600-78113800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:78105800-78106600	Enhancers	Fetal Heart	heart
15	chr7:78105800-78106600	Enhancers	HSMM	muscle
16	chr7:78106000-78106200	Enhancers	Brain Anterior Caudate	brain
17	chr7:78106000-78106400	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links