Variant report

Variant	rs10252155
Chromosome Location	chr7:150112258-150112259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150063792..150066571-chr7:150110080..150112407,2	MCF-7	breast:
2	chr7:150073712..150076709-chr7:150110455..150113126,2	K562	blood:
3	chr7:150064241..150066664-chr7:150111287..150113161,2	MCF-7	breast:
4	chr7:150015287..150018843-chr7:150110338..150114504,3	K562	blood:
5	chr7:150074958..150077372-chr7:150110610..150116279,6	MCF-7	breast:
6	chr7:150110757..150113190-chr7:150113429..150115942,2	K562	blood:

Variant related genes	Relation type
ENSG00000214022	Chromatin interaction
ENSG00000196456	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11982773	1.00[MEX][hapmap]
rs12669961	1.00[MEX][hapmap]
rs13438091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150104400-150112800	Weak transcription	Fetal Lung	lung
2	chr7:150104400-150131600	Weak transcription	Right Atrium	heart
3	chr7:150104600-150112800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:150104600-150117800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:150104600-150118000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:150104600-150118000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:150104600-150118000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:150104600-150118200	Weak transcription	Placenta	Placenta
9	chr7:150107600-150118000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:150108000-150113400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:150108000-150117800	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:150108200-150124000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:150108400-150118000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:150108400-150118000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:150108400-150125000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:150108600-150113000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:150108600-150114200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:150108600-150115000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:150108600-150118000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:150108600-150118200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:150108800-150114800	Weak transcription	Esophagus	oesophagus
22	chr7:150108800-150117400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:150108800-150117800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:150108800-150118000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:150108800-150118000	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:150108800-150118000	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:150108800-150118200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:150109000-150112800	Weak transcription	Brain Germinal Matrix	brain
29	chr7:150109000-150115400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:150109000-150118000	Weak transcription	Primary B cells from cord blood	blood
31	chr7:150109000-150118000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:150109200-150112600	Weak transcription	Fetal Intestine Large	intestine
33	chr7:150109200-150113400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:150109200-150113600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:150109200-150117800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr7:150109200-150118000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:150109200-150124400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:150109400-150117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:150109400-150118000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:150109600-150117800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:150109600-150117800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:150109800-150112800	Weak transcription	Pancreas	Pancrea
43	chr7:150109800-150124400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:150110000-150117600	Weak transcription	Dnd41	blood
45	chr7:150110000-150118000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr7:150110000-150118000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:150110000-150118000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:150110200-150112600	Weak transcription	Fetal Stomach	stomach
49	chr7:150110200-150117600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr7:150110200-150118000	Weak transcription	Primary B cells from peripheral blood	blood

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