Variant report

Variant	rs10252240
Chromosome Location	chr7:150200245-150200246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10242121	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10246726	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12667071	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4436040	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4442043	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4599728	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6464071	0.82[ASN][1000 genomes]
rs6948190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975725	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7776668	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7778650	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7779757	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7782505	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7783263	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7792243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805970	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9640276	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9640277	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9691127	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9691383	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1031309	chr7:150171651-150222230	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150199000-150202400	Enhancers	Dnd41	blood
2	chr7:150199000-150202800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:150199000-150202800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:150199000-150204000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr7:150199000-150204200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr7:150199200-150200400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr7:150199400-150201000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:150199400-150202800	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:150199400-150202800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr7:150199400-150202800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:150199400-150203000	Enhancers	Primary T cells from cord blood	blood
12	chr7:150199600-150200600	Enhancers	Duodenum Mucosa	Duodenum
13	chr7:150199600-150201600	Enhancers	Thymus	Thymus
14	chr7:150199600-150202400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:150199600-150202600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:150199600-150202600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr7:150199600-150202800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:150199600-150202800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr7:150199600-150202800	Enhancers	Fetal Thymus	thymus
20	chr7:150199800-150200400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr7:150199800-150200600	Enhancers	Spleen	Spleen
22	chr7:150199800-150200600	Enhancers	HUVEC	blood vessel
23	chr7:150200000-150201400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:150200000-150201600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:150200200-150200400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:150200200-150200800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:150200200-150201000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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