Variant report

Variant	rs1025226
Chromosome Location	chr15:42214225-42214226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1030418	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1648821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1648822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16972234	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16972243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16972244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16972246	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1704395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1704397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899033	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493012	1.00[CHD][hapmap]
rs73408579	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8034110	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
5	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
6	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv976926	chr15:42202094-42217599	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42190400-42218600	Weak transcription	Fetal Lung	lung
2	chr15:42197200-42218600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:42197400-42218600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:42201200-42225400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:42202200-42218400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:42202200-42218600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:42202200-42225200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:42204000-42217600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:42208400-42214400	Enhancers	Right Atrium	heart
10	chr15:42208400-42214800	Enhancers	Ovary	ovary
11	chr15:42208400-42218800	Genic enhancers	HUVEC	blood vessel
12	chr15:42209200-42218000	Weak transcription	Fetal Thymus	thymus
13	chr15:42209800-42216000	Strong transcription	GM12878-XiMat	blood
14	chr15:42210000-42214400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:42210200-42216000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:42210400-42218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:42210600-42214400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:42210600-42218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:42210600-42225400	Weak transcription	K562	blood
20	chr15:42210800-42217600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:42210800-42221400	Weak transcription	Brain Angular Gyrus	brain
22	chr15:42210800-42230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:42211200-42214800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr15:42211200-42218400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:42211200-42218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:42211200-42218800	Weak transcription	Hela-S3	cervix
27	chr15:42211400-42214600	Genic enhancers	HSMM	muscle
28	chr15:42211400-42218200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:42211400-42219800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:42211600-42214800	Enhancers	Stomach Mucosa	stomach
31	chr15:42211600-42216200	Enhancers	Left Ventricle	heart
32	chr15:42211600-42218000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:42211600-42221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:42211600-42226200	Weak transcription	Thymus	Thymus
35	chr15:42211800-42214600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:42211800-42215600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:42211800-42215600	Enhancers	HepG2	liver
38	chr15:42211800-42216000	Enhancers	Right Ventricle	heart
39	chr15:42211800-42218400	Weak transcription	Psoas Muscle	Psoas
40	chr15:42211800-42220800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:42211800-42220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr15:42211800-42221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:42212000-42214400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:42212000-42214600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr15:42212000-42214800	Enhancers	Fetal Intestine Large	intestine
46	chr15:42212000-42215400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr15:42212000-42217800	Weak transcription	Primary T cells from cord blood	blood
48	chr15:42212000-42218000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr15:42212000-42218400	Weak transcription	Colonic Mucosa	Colon
50	chr15:42212000-42220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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