Variant report

Variant	rs1025236
Chromosome Location	chr13:49360629-49360630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11148120	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11619503	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12429873	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12583213	0.86[ASN][1000 genomes]
rs12583426	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12584796	1.00[JPT][hapmap]
rs12585005	1.00[JPT][hapmap]
rs12585139	0.93[ASN][1000 genomes]
rs57124495	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57850097	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73480207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73480217	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73480257	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73482295	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs746030	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7999498	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49357400-49365200	Weak transcription	NH-A	brain
2	chr13:49358200-49365200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr13:49358200-49365400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:49358200-49365600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:49358400-49361600	Enhancers	Hela-S3	cervix
6	chr13:49358400-49364400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:49358400-49365200	Weak transcription	NHLF	lung
8	chr13:49358600-49365000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:49359200-49364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:49359800-49360800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:49360000-49362600	Enhancers	Placenta	Placenta
12	chr13:49360200-49360800	Enhancers	Osteobl	bone
13	chr13:49360600-49361800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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