Variant report

Variant	rs10252436
Chromosome Location	chr7:140515039-140515040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10214960	1.00[AFR][1000 genomes]
rs10226704	0.96[AFR][1000 genomes]
rs10232111	0.88[AFR][1000 genomes]
rs10236138	0.82[AFR][1000 genomes]
rs10241880	0.89[AFR][1000 genomes]
rs10245662	1.00[AFR][1000 genomes]
rs10245907	0.81[AFR][1000 genomes]
rs10262151	0.85[AFR][1000 genomes]
rs10271621	0.85[AFR][1000 genomes]
rs71645939	1.00[AFR][1000 genomes]
rs9886143	0.92[AFR][1000 genomes]
rs9986821	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140404800-140517000	Weak transcription	Psoas Muscle	Psoas
2	chr7:140469200-140519600	Weak transcription	Aorta	Aorta
3	chr7:140475000-140580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:140479600-140559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:140492200-140530600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:140493600-140536200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:140493800-140551800	Weak transcription	Left Ventricle	heart
8	chr7:140494400-140520400	Weak transcription	Fetal Stomach	stomach
9	chr7:140494400-140545400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:140494400-140555600	Weak transcription	Hela-S3	cervix
11	chr7:140494600-140517200	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:140498000-140548600	Weak transcription	A549	lung
13	chr7:140499200-140530400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:140500200-140517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:140500200-140530400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:140500200-140533800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:140500400-140517400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:140500400-140517400	Weak transcription	HSMM	muscle
19	chr7:140500400-140526800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:140500400-140529400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:140500400-140533800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:140500400-140534000	Weak transcription	Fetal Thymus	thymus
23	chr7:140500400-140545600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:140500400-140548800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:140500800-140526600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:140501000-140517000	Weak transcription	Fetal Lung	lung
27	chr7:140501600-140517200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:140501800-140515600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:140501800-140534000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:140502000-140533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:140502200-140526600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:140502400-140517000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:140503000-140517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:140503000-140526400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:140503200-140526600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:140503200-140526600	Weak transcription	Adipose Nuclei	Adipose
37	chr7:140503200-140530200	Weak transcription	Dnd41	blood
38	chr7:140503200-140533800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:140503200-140533800	Weak transcription	K562	blood
40	chr7:140503400-140517200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:140504600-140517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:140506000-140517000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:140506200-140533800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:140506400-140530200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:140507000-140517200	Weak transcription	Primary T cells from cord blood	blood
46	chr7:140507000-140522400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:140507200-140516800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:140507400-140548000	Weak transcription	Fetal Brain Female	brain
49	chr7:140508000-140517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:140508000-140532800	Weak transcription	Primary monocytes fromperipheralblood	blood

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