Variant report

Variant	rs10252478
Chromosome Location	chr7:78048141-78048142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10244163	1.00[AMR][1000 genomes]
rs6955653	1.00[AMR][1000 genomes]
rs9656146	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78045000-78052400	Enhancers	Brain Anterior Caudate	brain
2	chr7:78045800-78048600	Weak transcription	Ovary	ovary
3	chr7:78046400-78049200	Weak transcription	Left Ventricle	heart
4	chr7:78047000-78051000	Enhancers	Brain Substantia Nigra	brain
5	chr7:78047000-78051600	Enhancers	Brain Cingulate Gyrus	brain
6	chr7:78047200-78048400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:78047200-78051600	Enhancers	Brain Angular Gyrus	brain
8	chr7:78047200-78051600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:78047200-78052000	Enhancers	Brain Hippocampus Middle	brain
10	chr7:78047600-78049600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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