Variant report

Variant	rs10252500
Chromosome Location	chr7:14235236-14235237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10229939	0.87[EUR][1000 genomes]
rs10260511	0.86[EUR][1000 genomes]
rs10274998	0.87[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs10275304	0.87[EUR][1000 genomes]
rs6949500	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6949565	0.87[EUR][1000 genomes]
rs6967846	0.87[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1015312	chr7:14092753-14266917	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1021056	chr7:14162525-14269443	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1025437	chr7:14226741-14295671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14231600-14236600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:14231800-14235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:14231800-14235600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14233600-14237800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:14233800-14238000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:14234400-14236000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:14234400-14236000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:14234400-14236000	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:14234400-14237200	Enhancers	Brain Hippocampus Middle	brain
10	chr7:14234600-14235800	Enhancers	Brain Angular Gyrus	brain
11	chr7:14234800-14237000	Enhancers	NH-A	brain
12	chr7:14235000-14235400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:14235000-14235600	Weak transcription	Left Ventricle	heart
14	chr7:14235000-14236000	Enhancers	Brain Anterior Caudate	brain
15	chr7:14235000-14236800	Enhancers	Brain Substantia Nigra	brain
16	chr7:14235200-14235400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:14235200-14236000	Enhancers	Brain Germinal Matrix	brain
18	chr7:14235200-14237000	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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