Variant report

Variant	rs10254337
Chromosome Location	chr7:19185757-19185758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr7:19185329-19185796	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr7:19185240-19185805	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr7:19185204-19185788	H1-hESC	embryonic stem cell:	n/a	n/a
4	SP1	chr7:19185369-19186209	H1-hESC	embryonic stem cell:	n/a	n/a
5	NANOG	chr7:19185492-19185839	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr7:19185297-19185821	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr7:19184399-19185884	H1-hESC	embryonic stem cell:	n/a	n/a
8	E2F6	chr7:19185264-19185832	H1-hESC	embryonic stem cell:	n/a	n/a
9	SUZ12	chr7:19183168-19186146	NT2-D1	testis:	n/a	n/a
10	RAD21	chr7:19185398-19185902	H1-hESC	embryonic stem cell:	n/a	n/a
11	REST	chr7:19185473-19185784	H1-hESC	embryonic stem cell:	n/a	n/a
12	TEAD4	chr7:19185462-19185821	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTBP2	chr7:19183190-19185798	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr7:19185282-19185851	H1-hESC	embryonic stem cell:	n/a	n/a
15	TEAD4	chr7:19185402-19185862	H1-hESC	embryonic stem cell:	n/a	n/a
16	REST	chr7:19185132-19185784	H1-hESC	embryonic stem cell:	n/a	n/a
17	E2F6	chr7:19184707-19185910	H1-hESC	embryonic stem cell:	n/a	n/a
18	NANOG	chr7:19185576-19185869	H1-hESC	embryonic stem cell:	n/a	n/a
19	SIN3A	chr7:19185048-19185860	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
FERD3L	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10228726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262584	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2285681	0.80[JPT][hapmap]
rs73325577	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19184000-19186000	Bivalent Enhancer	Fetal Stomach	stomach
2	chr7:19184800-19186000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:19185000-19185800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:19185000-19185800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:19185000-19186000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr7:19185000-19186200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:19185200-19185800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:19185200-19186000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:19185400-19185800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:19185400-19186000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:19185400-19186000	Bivalent Enhancer	Brain Germinal Matrix	brain
12	chr7:19185600-19185800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr7:19185600-19185800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:19185600-19185800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr7:19185600-19185800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr7:19185600-19185800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr7:19185600-19185800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
18	chr7:19185600-19185800	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
19	chr7:19185600-19185800	Bivalent Enhancer	Brain Hippocampus Middle	brain
20	chr7:19185600-19185800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
21	chr7:19185600-19186000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr7:19185600-19186000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:19185600-19186200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:19185600-19186200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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