Variant report

Variant	rs10254828
Chromosome Location	chr7:117363386-117363387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117356959..117359693-chr7:117361540..117364405,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10245327	1.00[AMR][1000 genomes]
rs10248995	1.00[AMR][1000 genomes]
rs10274808	1.00[AMR][1000 genomes]
rs28376572	0.83[AFR][1000 genomes]
rs28403532	1.00[AMR][1000 genomes]
rs28433845	1.00[AMR][1000 genomes]
rs28647732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117344400-117364400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:117346600-117373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:117347600-117366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:117350200-117373800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:117350400-117364600	Weak transcription	NHLF	lung
8	chr7:117351600-117364600	Weak transcription	Fetal Stomach	stomach
9	chr7:117351800-117366600	Weak transcription	Aorta	Aorta
10	chr7:117352400-117364800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:117352800-117368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:117353200-117384600	Weak transcription	Ovary	ovary
13	chr7:117353400-117367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:117354600-117373800	Weak transcription	Esophagus	oesophagus
15	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:117355800-117369400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:117356800-117376000	Weak transcription	NH-A	brain
20	chr7:117357200-117374800	Weak transcription	Pancreas	Pancrea
21	chr7:117357600-117375400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:117357800-117370800	Weak transcription	Fetal Intestine Large	intestine
23	chr7:117358200-117370000	Weak transcription	Fetal Kidney	kidney
24	chr7:117358400-117364000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:117358400-117364400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:117358400-117371400	Weak transcription	Fetal Intestine Small	intestine
27	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:117358600-117368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:117358800-117363600	Weak transcription	Fetal Brain Male	brain
30	chr7:117358800-117363800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
32	chr7:117359600-117364600	Weak transcription	Brain Anterior Caudate	brain
33	chr7:117359800-117364600	Weak transcription	Brain Substantia Nigra	brain
34	chr7:117359800-117368000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:117360000-117368000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:117360200-117363800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:117360200-117364000	Weak transcription	Brain Germinal Matrix	brain
38	chr7:117360200-117374000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:117360400-117364000	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:117360400-117364200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:117360400-117364400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:117360400-117368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:117360400-117369000	Weak transcription	Adipose Nuclei	Adipose
44	chr7:117360600-117374800	Weak transcription	Left Ventricle	heart
45	chr7:117360800-117363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr7:117361600-117364000	Weak transcription	Fetal Brain Female	brain
47	chr7:117361600-117364200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:117362000-117363800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:117362200-117364000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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