Variant report

Variant	rs10255652
Chromosome Location	chr7:53711052-53711053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10236478	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10277106	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13438638	0.86[ASN][1000 genomes]
rs17624383	0.86[ASN][1000 genomes]
rs17624697	0.86[ASN][1000 genomes]
rs2042540	0.86[ASN][1000 genomes]
rs2194642	0.86[ASN][1000 genomes]
rs28852695	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53709400-53711400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:53710000-53712400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:53710200-53712400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:53710200-53712600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:53710400-53711400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:53710400-53711600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:53710400-53711600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:53710400-53711600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:53710400-53712000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:53710600-53711400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:53710600-53711600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:53710600-53711800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:53710800-53711200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr7:53710800-53711600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:53711000-53711200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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