Variant report

Variant	rs10255780
Chromosome Location	chr7:47750203-47750204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10255531	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256037	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12702366	0.81[ASN][1000 genomes]
rs12702369	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13232026	0.81[ASN][1000 genomes]
rs28629784	0.85[ASN][1000 genomes]
rs7795529	0.93[ASN][1000 genomes]
rs7795530	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1024392	chr7:47707023-47758976	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1028355	chr7:47715107-47758976	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47747400-47755200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:47748200-47750400	Enhancers	Fetal Stomach	stomach
3	chr7:47748400-47750800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:47748600-47750400	Enhancers	Stomach Smooth Muscle	stomach
5	chr7:47748600-47750400	Enhancers	A549	lung
6	chr7:47748600-47750600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:47748800-47755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:47749000-47754200	Weak transcription	GM12878-XiMat	blood
9	chr7:47749200-47750600	Enhancers	Colon Smooth Muscle	Colon
10	chr7:47749200-47753400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:47749400-47750600	Enhancers	Fetal Heart	heart
12	chr7:47749400-47751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:47749600-47750400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr7:47749600-47750400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr7:47749600-47750400	Enhancers	Right Ventricle	heart
16	chr7:47749800-47750400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:47749800-47750600	Enhancers	Spleen	Spleen
18	chr7:47750000-47750400	Enhancers	Fetal Muscle Leg	muscle
19	chr7:47750200-47751600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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