The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs10255953
Chromosome Location
chr7:103658026-103658027
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:103648042..103650999-chr7:103656412..103659096,2
K562
blood:
2
chr7:103656541..103658129-chr7:103668696..103670747,2
K562
blood:
3
chr7:103657443..103659638-chr7:103669864..103671987,2
K562
blood:
4
chr7:103628980..103630877-chr7:103656452..103658891,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000189056
Chromatin interaction
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:4)
rs_ID
r
2
[population]
rs10249770
1.00[AMR][1000 genomes]
rs1858814
0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307413
1.00[AMR][1000 genomes]
rs9987011
0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv888924
chr7:103637906-103706936
Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats
Chromatin interactive regionlncRNA
4 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links