Variant report

Variant	rs10257042
Chromosome Location	chr7:152530258-152530259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10225964	1.00[AMR][1000 genomes]
rs10227521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234383	1.00[AMR][1000 genomes]
rs10241315	1.00[AMR][1000 genomes]
rs10273204	1.00[AMR][1000 genomes]
rs10278253	1.00[AMR][1000 genomes]
rs28470534	1.00[AMR][1000 genomes]
rs9886250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033496	chr7:152125903-152615617	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv539208	chr7:152125903-152615617	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv831193	chr7:152353544-152592678	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv970617	chr7:152517945-152544433	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv889506	chr7:152521953-152631037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152488800-152545600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:152489800-152568800	Weak transcription	Hela-S3	cervix
3	chr7:152497600-152549200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:152498400-152556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:152498400-152559200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:152498800-152539600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:152499200-152546800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:152500600-152556000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:152501400-152550400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:152502000-152539200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:152504000-152555000	Weak transcription	K562	blood
12	chr7:152508400-152549200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:152509200-152551200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:152510200-152534000	Weak transcription	Fetal Thymus	thymus
15	chr7:152510200-152569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:152513400-152549200	Weak transcription	Placenta	Placenta
17	chr7:152513400-152550400	Weak transcription	Esophagus	oesophagus
18	chr7:152513600-152546000	Weak transcription	Spleen	Spleen
19	chr7:152514400-152549400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:152514400-152554800	Weak transcription	Osteobl	bone
21	chr7:152514800-152555000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:152516800-152547200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:152518000-152546000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:152518000-152546000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:152518000-152548200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr7:152518000-152548400	Weak transcription	Pancreas	Pancrea
27	chr7:152518000-152548800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:152518000-152550400	Weak transcription	Right Ventricle	heart
29	chr7:152518000-152558800	Weak transcription	Dnd41	blood
30	chr7:152518200-152545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:152518200-152546000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:152518200-152548800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:152518400-152546600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:152518400-152550400	Weak transcription	Liver	Liver
35	chr7:152518600-152551400	Weak transcription	HSMMtube	muscle
36	chr7:152518800-152542400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:152518800-152548400	Weak transcription	Left Ventricle	heart
38	chr7:152519000-152539600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:152519000-152544600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:152519000-152544600	Weak transcription	Fetal Brain Female	brain
41	chr7:152519000-152545000	Weak transcription	Thymus	Thymus
42	chr7:152519000-152548600	Weak transcription	Gastric	stomach
43	chr7:152519000-152548800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:152519200-152539600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:152519200-152549400	Weak transcription	Adipose Nuclei	Adipose
46	chr7:152519400-152550400	Weak transcription	Ovary	ovary
47	chr7:152519600-152544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:152519600-152547000	Weak transcription	Fetal Stomach	stomach
49	chr7:152519600-152548400	Weak transcription	Fetal Intestine Small	intestine
50	chr7:152519600-152549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links