Variant report

Variant	rs10257519
Chromosome Location	chr7:16473694-16473695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10257743	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs10265018	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16461600-16478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16473000-16474000	Active TSS	Brain Substantia Nigra	brain
3	chr7:16473000-16474000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:16473000-16474000	Flanking Active TSS	K562	blood
5	chr7:16473200-16473800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:16473200-16473800	Active TSS	Brain Anterior Caudate	brain
7	chr7:16473200-16473800	Active TSS	Brain Cingulate Gyrus	brain
8	chr7:16473200-16473800	Active TSS	Colon Smooth Muscle	Colon
9	chr7:16473200-16473800	Active TSS	Stomach Smooth Muscle	stomach
10	chr7:16473200-16474000	Active TSS	Brain Hippocampus Middle	brain
11	chr7:16473400-16473800	Active TSS	Adipose Nuclei	Adipose
12	chr7:16473400-16473800	Active TSS	Brain Angular Gyrus	brain
13	chr7:16473400-16473800	Active TSS	NHDF-Ad	bronchial
14	chr7:16473400-16474000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:16473400-16474000	Enhancers	A549	lung
16	chr7:16473600-16473800	Enhancers	Stomach Mucosa	stomach
17	chr7:16473600-16473800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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