Variant report
| Variant | rs1025752 |
|---|---|
| Chromosome Location | chr2:212723459-212723460 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:212721894..212724751-chr2:212727440..212730383,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs1439253 | 1.00[CEU][hapmap] |
| rs16846940 | 0.81[YRI][hapmap] |
| rs16847152 | 0.86[CHB][hapmap];0.95[CHD][hapmap] |
| rs6757087 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875785 | chr2:212683946-212752193 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv834525 | chr2:212693190-212860356 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv875786 | chr2:212715410-212752193 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv875787 | chr2:212722988-212752193 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | nsv875788 | chr2:212722988-212752193 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | nsv875789 | chr2:212722988-212761152 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
