Variant report

Variant	rs10257622
Chromosome Location	chr7:120161371-120161372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10081324	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10227379	1.00[ASN][1000 genomes]
rs10234674	0.95[ASN][1000 genomes]
rs10244347	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245548	0.83[AFR][1000 genomes]
rs10248263	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259436	1.00[ASN][1000 genomes]
rs10260490	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268591	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488302	1.00[ASN][1000 genomes]
rs1609181	1.00[ASN][1000 genomes]
rs17142775	0.85[AFR][1000 genomes]
rs17142782	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454884	1.00[ASN][1000 genomes]
rs28475180	0.84[AFR][1000 genomes]
rs6950392	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970111	1.00[ASN][1000 genomes]
rs6970412	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978574	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435890	0.83[AFR][1000 genomes]
rs7357188	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886214	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120152200-120162000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120159000-120161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:120159400-120162000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:120159600-120162000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:120160400-120162000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:120160600-120161800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:120160600-120161800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:120160600-120162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:120160600-120162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:120160600-120162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:120160600-120164600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120161000-120162000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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