Variant report

Variant	rs10257912
Chromosome Location	chr7:22296562-22296563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22150028..22150543-chr7:22296068..22296744,2	MCF-7	breast:
2	chr7:22149668..22150324-chr7:22296109..22296964,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10238496	1.00[AFR][1000 genomes]
rs10240122	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815409	chr7:22296017-22315855	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
3	chr7:22278600-22325800	Weak transcription	Liver	Liver
4	chr7:22278800-22310800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:22279000-22297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:22282200-22298600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:22282200-22309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
9	chr7:22287400-22299600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:22290200-22303800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:22291200-22302600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:22291800-22308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:22292600-22296600	Strong transcription	HepG2	liver
14	chr7:22293000-22296800	Enhancers	Brain Substantia Nigra	brain
15	chr7:22294600-22297400	Enhancers	Stomach Mucosa	stomach
16	chr7:22295400-22296600	Enhancers	Brain Anterior Caudate	brain
17	chr7:22295400-22296600	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:22295400-22296600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:22295400-22296800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:22295400-22297200	Enhancers	Brain Angular Gyrus	brain
21	chr7:22295600-22296600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:22295600-22296600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:22295600-22296600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:22295600-22296600	Enhancers	Fetal Intestine Small	intestine
25	chr7:22295600-22297200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr7:22295600-22297200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:22295600-22297200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:22295800-22296600	Enhancers	Fetal Kidney	kidney
29	chr7:22296000-22298800	Weak transcription	Fetal Thymus	thymus
30	chr7:22296000-22300000	Strong transcription	Dnd41	blood
31	chr7:22296000-22307200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:22296000-22309000	Weak transcription	Fetal Intestine Large	intestine
33	chr7:22296000-22309400	Weak transcription	Pancreas	Pancrea
34	chr7:22296200-22296800	Weak transcription	Fetal Brain Male	brain
35	chr7:22296400-22296600	Active TSS	Brain Hippocampus Middle	brain
36	chr7:22296400-22308800	Weak transcription	Duodenum Mucosa	Duodenum

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