Variant report

Variant	rs10258331
Chromosome Location	chr7:5421404-5421405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:5420732..5423186-chr7:5425259..5427446,2	MCF-7	breast:
2	chr7:5420460..5423379-chr7:5428515..5430331,2	MCF-7	breast:
3	chr7:5410585..5413099-chr7:5421025..5423584,3	MCF-7	breast:
4	chr7:5419534..5423325-chr7:5460448..5463513,3	MCF-7	breast:
5	chr7:5415556..5417530-chr7:5418866..5421524,3	MCF-7	breast:
6	chr7:5420682..5423339-chr7:5431916..5434654,3	MCF-7	breast:
7	chr7:5420196..5424221-chr7:5463874..5468257,7	MCF-7	breast:
8	chr7:5418980..5420716-chr7:5420847..5423992,3	K562	blood:
9	chr7:5421329..5423129-chr7:5426489..5429179,2	K562	blood:
10	chr7:5417354..5418908-chr7:5419651..5421890,2	MCF-7	breast:
11	chr7:5419562..5424276-chr7:5462194..5465605,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272953	Chromatin interaction
ENSG00000182095	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12673205	0.85[EUR][1000 genomes]
rs4724667	0.83[EUR][1000 genomes]
rs56327832	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56339818	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59848349	0.85[EUR][1000 genomes]
rs73673126	0.85[EUR][1000 genomes]
rs7796767	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7803121	0.91[EUR][1000 genomes]
rs7810692	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	nsv887391	chr7:5224407-5572132	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	292 gene(s)	inside rSNPs	diseases
5	nsv830889	chr7:5248157-5427465	Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv823996	chr7:5285503-5465988	Flanking Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv887395	chr7:5305297-5427128	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv887396	chr7:5305297-5475409	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv1814049	chr7:5314993-5675131	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	333 gene(s)	inside rSNPs	diseases
10	nsv887397	chr7:5315557-5450031	Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv887398	chr7:5328429-5427128	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	esv1820266	chr7:5332088-5665173	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
13	nsv887399	chr7:5366935-5427128	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv533965	chr7:5370746-5548397	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
15	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
16	nsv605986	chr7:5375542-5427128	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv887400	chr7:5393243-5441337	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv887401	chr7:5393243-5539958	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
19	nsv887402	chr7:5394951-5494677	Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
20	nsv887403	chr7:5399044-5450031	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv887404	chr7:5402606-5667645	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
22	nsv887405	chr7:5409059-5552436	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
23	esv1849077	chr7:5409569-5434107	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv887406	chr7:5414602-5552436	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
25	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5372200-5422000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr7:5372200-5424200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:5390400-5421800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:5395000-5421800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:5395000-5421800	Weak transcription	Psoas Muscle	Psoas
6	chr7:5395000-5421800	Weak transcription	Right Atrium	heart
7	chr7:5395000-5422400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:5395200-5422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:5401400-5421800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:5402200-5421800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:5403000-5424400	Weak transcription	Hela-S3	cervix
12	chr7:5403800-5421800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:5404600-5421800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:5407000-5421800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:5408200-5423200	Strong transcription	HepG2	liver
16	chr7:5408800-5421800	Strong transcription	Fetal Intestine Large	intestine
17	chr7:5410200-5421600	Weak transcription	Fetal Kidney	kidney
18	chr7:5410200-5422200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:5410200-5426800	Weak transcription	HUVEC	blood vessel
20	chr7:5410200-5429200	Weak transcription	Primary B cells from cord blood	blood
21	chr7:5410400-5421800	Weak transcription	NHDF-Ad	bronchial
22	chr7:5410800-5421800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:5413000-5421800	Weak transcription	A549	lung
24	chr7:5413200-5421600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:5413600-5422000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:5413600-5426800	Weak transcription	HSMMtube	muscle
27	chr7:5413600-5435000	Weak transcription	HSMM	muscle
28	chr7:5413800-5424200	Weak transcription	Small Intestine	intestine
29	chr7:5413800-5426800	Weak transcription	HMEC	breast
30	chr7:5414200-5421800	Weak transcription	Brain Substantia Nigra	brain
31	chr7:5415600-5421600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr7:5416200-5421800	Weak transcription	Fetal Lung	lung
33	chr7:5416400-5422000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:5416600-5421600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:5416600-5421600	Weak transcription	Osteobl	bone
36	chr7:5416600-5421800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:5416800-5422800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:5416800-5430400	Weak transcription	GM12878-XiMat	blood
39	chr7:5417400-5421600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:5417400-5421600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:5417400-5423200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:5417600-5421800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:5417600-5426200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr7:5417800-5421600	Weak transcription	NHLF	lung
45	chr7:5417800-5421800	Weak transcription	Aorta	Aorta
46	chr7:5417800-5422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:5418000-5421600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:5418000-5421800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:5418000-5421800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:5418000-5421800	Weak transcription	Fetal Thymus	thymus

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