Variant report

Variant	rs10258507
Chromosome Location	chr7:71432828-71432829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:71430764..71432829-chr7:71445344..71447656,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1017047	0.86[CHB][hapmap]
rs10229928	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10231062	0.86[CHB][hapmap]
rs10265141	0.85[CHB][hapmap]
rs10273495	0.86[CHB][hapmap]
rs10280279	0.89[CHB][hapmap]
rs1034806	0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1099451	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1099452	0.83[ASN][1000 genomes]
rs12666489	0.80[ASN][1000 genomes]
rs1525130	0.87[CEU][hapmap]
rs17137604	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17137608	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17144164	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17144232	0.85[CHB][hapmap]
rs17144240	0.86[CHB][hapmap]
rs17349645	0.87[CEU][hapmap]
rs17428098	0.87[CEU][hapmap]
rs17428133	0.87[CEU][hapmap]
rs28411707	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867564	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2867565	0.81[ASN][1000 genomes]
rs35305736	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35720869	0.84[ASN][1000 genomes]
rs4719197	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs4719198	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4719199	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57300068	0.80[EUR][1000 genomes]
rs59937976	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6963963	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968406	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980132	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7790072	1.00[CEU][hapmap]
rs844684	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs844685	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs844691	0.85[ASN][1000 genomes]
rs844692	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs844693	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs844694	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs844695	0.85[ASN][1000 genomes]
rs844696	0.86[ASN][1000 genomes]
rs844698	0.85[ASN][1000 genomes]
rs844699	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs844701	0.86[CHB][hapmap]
rs844702	0.86[ASN][1000 genomes]
rs844705	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs844736	0.83[ASN][1000 genomes]
rs844740	0.83[ASN][1000 genomes]
rs844785	0.95[JPT][hapmap]
rs844790	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs844791	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs844793	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs844795	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs844796	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs917209	0.82[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888344	chr7:71406392-71488833	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv888345	chr7:71408360-71485245	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71429400-71433000	Weak transcription	Fetal Brain Female	brain
2	chr7:71431600-71440600	Weak transcription	Thymus	Thymus
3	chr7:71431600-71445800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:71431800-71443400	Weak transcription	Fetal Thymus	thymus
5	chr7:71432000-71439400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:71432000-71446400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:71432600-71433400	Enhancers	Fetal Heart	heart

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