Variant report

Variant	rs10258770
Chromosome Location	chr7:18981266-18981267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10264832	0.87[YRI][hapmap]
rs17140363	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28379904	1.00[AMR][1000 genomes]
rs73684261	1.00[AMR][1000 genomes]
rs73684651	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18979200-18981400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:18979200-18982000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:18979400-18981600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:18980000-18981400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:18980400-18981400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18981000-18982600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:18981200-18981400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:18981200-18981400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:18981200-18981800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:18981200-18983200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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